PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa13g055780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 311aa    MW: 35336.3 Da    PI: 7.0875
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa13g055780.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.56.4e-2936120183
                     EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+kvltpsdv+k++rlv+pk++ae++   +  +++++ l ++d+ g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F+
  Csa13g055780.1  36 FDKVLTPSDVGKLNRLVIPKQHAENYfplED-NQNGIFLDFQDRLGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLTSGDTVSFH 120
                     89*********************999**743.457899***********************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-3730121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2934121IPR015300DNA-binding pseudobarrel domain
CDDcd100174.68E-2634121No hitNo description
PROSITE profilePS5086313.88836140IPR003340B3 DNA binding domain
SMARTSM010192.6E-2036140IPR003340B3 DNA binding domain
PfamPF023621.6E-2536121IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNISTTNPDQ ELTEIGATGS GTNNYFFNSE MREHMFDKVL TPSDVGKLNR LVIPKQHAEN  60
YFPLEDNQNG IFLDFQDRLG KMWRFRYSYW NSSQSYVMTK GWSRFVKEKK LTSGDTVSFH  120
RGYIPDDNAP ERRLQIVLID WSHKAERNQH GLSFGSYPTV TFYPAPEYSM PSHRSFHPFH  180
HNQYQERESP VYGYGRFVYG GRYYEGSPLV YASVPVFPPA MRVPPPAPPQ PSATRKLRLF  240
GVDVEESSSS GETRGEMGVA GHSSSSPVVI RDDDQSPWRS PRGEMGAGTS SAMQLCDDEE  300
YKRKGKSLEL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-383312111102DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1614921e-141AL161492.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 4.
GenBankCP0026871e-141CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankF11O41e-141AF096370.1 Arabidopsis thaliana BAC F11O4.
GenBankFJ8737341e-141FJ873734.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA4 (NGA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456151.10.0PREDICTED: B3 domain-containing transcription factor NGA4-like
SwissprotO825951e-163NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLD7M4V01e-165D7M4V0_ARALL; Putative uncharacterized protein
STRINGscaffold_604140.11e-165(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-128B3 family protein